Stem-loop gma-MIR5030

Accession

MI0017900

Description

Glycine max gma-MIR5030 precursor miRNA

Sequence

10443 reads, 50.0 reads per million, 178 experiments

uuccggugaAGAACAAUUUGUGUUUUACCGGaagaaccuuuuuucggaagcuuuccggaagaaccuucuuccggaaccuuuccggAAGAAGGUUCUUCCGGAAgaacaaauuguuguucuuccagaagaa
(((.((.(((.((((((((((.((((.(((((((((((((((((((((((..((((((((((....))))))))))..))))))))))))))))))))))))))))))))))))).)))..)).)))...

Structure

---   c  -u   G          G    A                       cu          a 
   uuc gg  gaA AACAAUUUGU UUUU CCGGaagaaccuuuuuucggaag  uuccggaaga c
   ||| ||  ||| |||||||||| |||| |||||||||||||||||||||||  ||||||||||  
   aag cc  cuu uuguuaaaca agAA GGCCUUCUUGGAAGAAggccuuu  aaggccuucu c
aag   a  uu   g          -    -                       cc          u 

Annotation confidence Low

Comments

This sequence was incorrectly named MIR4424a in [1].

Genome context

chr3: 29448372-29448501 [+]

Mature gma-miR5030-5p

• Accession: MIMAT0021049
• Description: Glycine max gma-miR5030-5p mature miRNA
• Sequence: 10 - AGAACAAUUUGUGUUUUACCGG - 31
• Evidence: experimental ; 454 [1]

Mature gma-miR5030-3p

• Accession: MIMAT0054202
• Description: Glycine max gma-miR5030-3p mature miRNA
• Sequence: 86 - AAGAAGGUUCUUCCGGAA - 103
• Evidence: experimental ; unknown

References

1. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506