Stem-loop gma-MIR5031

Accession

MI0017901

Description

Glycine max gma-MIR5031 precursor miRNA

Sequence

uguuuaauaaaaucgugacauguaacgauaaacguuuaauaaaauagugaagguagacaaUUAAUGAUUAACAUCUAAUUUcuagauuggggauaacaggauuauaaaaaauuggggauuaaauucguaaauuaaaauaaauagaggauca
((((((.....(((((........)))))..((.((((.........)))).))....((((.((((((((..((((((((...((((..(.....)..)))).....))))))))..))))..)))).))))....))))))........

Structure

--------      auaaaaucgugacauguaacgauaaacguuuaauaaaauagugaagguagac    A    --    CA        --cua    gg g 
        uguuua                                                    aaUU AUGA  UUAA  UCUAAUUU     gauu  g a
        ||||||                                                    |||| ||||  ||||  ||||||||     ||||  | u
        auaaau                                                    uuaa ugcu  aauu  ggguuaaa     uuag  c a
acuaggag      ------------------------------------------------aaaa    a    ua    ag        aaaua    ga a 

Annotation confidence Not enough data

Genome context

chr1: 54737918-54738068 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR5031

Mature gma-miR5031

• Accession: MIMAT0021050
• Description: Glycine max gma-miR5031 mature miRNA
• Sequence: 61 - UUAAUGAUUAACAUCUAAUUU - 81
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21751852
   Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
   "Radwan O, Liu Y, Clough SJ"
   "Mol Plant Microbe Interact (2011) 24:958-972