Stem-loop gma-MIR1523b

Accession

MI0017902

Description

Glycine max gma-MIR1523b precursor miRNA

Literature search

1 open access papers mention gma-MIR1523b
(1 sentences)

Sequence

uagacucauuuugaaauaaaugugagcucgggaguaaugaggagugaugaaaggauuuauUCAUCGCUCCUGAGCUCACAuuuaucccauaauggguccuugacccuaauugauucaccaguagagggacaagcuucauguaaauaagcgu
..(((((((.((......)).))))).)).(((((...(((((.(.((....((((...........................))))....)).).)))))..((((.((((......))))..))))....)))))((((......))))

Structure

uagacucauuuugaaauaaaugugagcucg     ----------------------------aau     g g  gaaa    uuauUCAUCGCU 
                              ggagu                               gagga u au    ggau            C
                              |||||                               ||||| | ||    ||||            C
                              cuucg                               uuccu g ua    ccua            U
----------------ugcgaauaaaugua     aacagggagaugaccacuuaguuaaucccag     g g  auac    uuuACACUCGAG 

Annotation confidence Not enough data

Genome context

chr2: 12591024-12591174 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR1523b

Mature gma-miR1523b

• Accession: MIMAT0021051
• Description: Glycine max gma-miR1523b mature miRNA
• Sequence: 61 - UCAUCGCUCCUGAGCUCACA - 80
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21751852
   Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
   "Radwan O, Liu Y, Clough SJ"
   "Mol Plant Microbe Interact (2011) 24:958-972