Stem-loop gma-MIR5033

Accession

MI0017904

Description

Glycine max gma-MIR5033 precursor miRNA

Sequence

58723 reads, 408.0 reads per million, 175 experiments

guguuuuuuuucaagcagccauguguguuagaugauguuuggaaaugagaagaaaaccguGGCUGUACAAAAGGAAACUACuuucgcaaaacaaacauugccguccaacuguaagaugagaaaAAAAUCAAAUGAUGGGGAUGUgucuaag
(.(((((((((((((((..(((.((...)).))).))))))))).......)))))))(((..(((......((((.....)))).....)))..))).(((((((..((((....(((........)))....))))))))).)).....

Structure

guguuuuuuuucaagcagccauguguguuagaugauguuuggaaaugagaagaaaacc   GC   ACAAAA    A 
                                                          guG  UGU      GGAA C
                                                          |||  |||      |||| U
                                                          uac  aca      cuuu A
-----gaaucugUGUAGGGGUAGUAAACUAAAAaaagaguagaaugucaaccugccgu   aa   -aaacg    C 

Annotation confidence Low

Genome context

chr4: 47362703-47362853 [+]

Mature gma-miR5033-5p

• Accession: MIMAT0021053
• Description: Glycine max gma-miR5033-5p mature miRNA
• Sequence: 61 - GGCUGUACAAAAGGAAACUAC - 81
• Evidence: experimental ; SOLiD [1]

Mature gma-miR5033-3p

• Accession: MIMAT0054205
• Description: Glycine max gma-miR5033-3p mature miRNA
• Sequence: 124 - AAAAUCAAAUGAUGGGGAUGU - 144
• Evidence: experimental ; unknown

References

1. PubMed ID: 21751852
   Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
   "Radwan O, Liu Y, Clough SJ"
   "Mol Plant Microbe Interact (2011) 24:958-972