Stem-loop gma-MIR171h

Accession

MI0017905

Description

Glycine max gma-MIR171h precursor miRNA

Literature search

16 open access papers mention gma-MIR171h
(43 sentences)

Sequence

545339 reads, 811.0 reads per million, 178 experiments

gcaaaaguagacacggCGUGAUAUUGGUACGGCUCAUCUUaauucaaccacuauaucaacgauugagaCGAGCCGAAUCAAUAUCACUCUuguuugcuucauugcauauauauauauacuagcagcuuuuucuuuagaaaccaaacuaugc
(((((((((((((...((((((((((((..................))))..))))).)))........(((..((.......)).))).)))))))))..))))..............................................

Structure

----------------------------------------------    --         --------------------------cgg   -     --    ACGGCUCA 
                                              gcaa  aaguagaca                             CGU GAUAU  UGGU        U
                                              ||||  |||||||||                             ||| |||||  ||||         
                                              cguu  uucguuugu                             gca cuaua  acca        C
cguaucaaaccaaagauuucuuuuucgacgaucauauauauauaua    ac         UCUCACUAUAACUAAGCCGAGCagaguua   a     uc    acuuaaUU 

Annotation confidence Low

Genome context

chr6: 10887944-10888094 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR171h

Mature gma-miR171h-5p

• Accession: MIMAT0054206
• Description: Glycine max gma-miR171h-5p mature miRNA
• Sequence: 17 - CGUGAUAUUGGUACGGCUCAUCUU - 40
• Evidence: experimental ; unknown

Mature gma-miR171h-3p

• Accession: MIMAT0021054
• Description: Glycine max gma-miR171h-3p mature miRNA
• Sequence: 69 - CGAGCCGAAUCAAUAUCACUCU - 90
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21751852
   Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
   "Radwan O, Liu Y, Clough SJ"
   "Mol Plant Microbe Interact (2011) 24:958-972