Stem-loop gma-MIR5034

Accession

MI0017906

Description

Glycine max gma-MIR5034 precursor miRNA

Sequence

105111 reads, 362.0 reads per million, 177 experiments

cgacacuguagaaacaguaaaaauugagucuauuuaaaggaguccucguucccuuugugaGGUACCCUUUCAGAUAGUCUCAaaaccagguuUUAGAGAGAGAAGCUCUGCCUAGGaaaaacucuuuguaagcuucuaugcccauaucaau
.(((.(((((((..((((....))))..)))))....))..)))...........((((.((((.............(((((((((...))))).)))).(((((((.(((..((((.....)))).)))))))))).)))))))).....

Structure

cgacacuguagaaacaguaaaaauugagucuauuuaaaggaguccucguucccuu    a    CCCUUUCAGAUAGUCUCAaaaccagguuUUAGAGAG       C   CU    a 
                                                       ugug GGUA                                    AGAAGCU UGC  AGGa a
                                                       |||| ||||                                    ||||||| |||  |||| a
                                                       auac ccgu                                    ucuucga aug  uucu a
--------------------------------------------------uaacu    -    -----------------------------------a       -   -u    c 

Annotation confidence Medium

Genome context

chr6: 46560092-46560242 [+]

Mature gma-miR5034-5p

• Accession: MIMAT0021055
• Description: Glycine max gma-miR5034-5p mature miRNA
• Sequence: 61 - GGUACCCUUUCAGAUAGUCUCA - 82
• Evidence: experimental ; SOLiD [1]

Mature gma-miR5034-3p

• Accession: MIMAT0054207
• Description: Glycine max gma-miR5034-3p mature miRNA
• Sequence: 93 - UUAGAGAGAGAAGCUCUGCCUAGG - 116
• Evidence: experimental ; unknown

References

1. PubMed ID: 21751852
   Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
   "Radwan O, Liu Y, Clough SJ"
   "Mol Plant Microbe Interact (2011) 24:958-972