Stem-loop gma-MIR5035

Accession

MI0017908

Description

Glycine max gma-MIR5035 precursor miRNA

Sequence

19592 reads, 74.0 reads per million, 178 experiments

aucagcuuaggcuugucuacugaaaaucauauaaacauauguaccuaccUAUCCUAUGAGCUUCUAAACAUUuuuucccuuaugccaaagaaaacaucuuuggcaugagggaaaaaaUGUUUAGAAGCUCAUAGAAUAGAUagguacauau
.((((..(((......))))))).............(((((((((((.((((.((((((((((((((((((((((((((((((((((((((.....)))))))))))))))))))))))))))))))))))))).)))).)))))))))))

Structure

aucagcuuaggcuugucuacugaaaaucauauaaac           c    C                                      a 
                                    auauguaccua cUAU CUAUGAGCUUCUAAACAUUuuuucccuuaugccaaaga a
                                    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||| a
                                    uauacauggaU GAUA GAUACUCGAAGAUUUGUaaaaaagggaguacgguuucu c
------------------------------------           A    A                                      a 

Annotation confidence Medium

Genome context

chr7: 1959028-1959178 [+]

Mature gma-miR5035-5p

• Accession: MIMAT0021058
• Description: Glycine max gma-miR5035-5p mature miRNA
• Sequence: 50 - UAUCCUAUGAGCUUCUAAACAUU - 72
• Evidence: experimental ; SOLiD [1]

Mature gma-miR5035-3p

• Accession: MIMAT0032121
• Description: Glycine max gma-miR5035-3p mature miRNA
• Sequence: 118 - UGUUUAGAAGCUCAUAGAAUAGAU - 141
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21751852
   Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
   "Radwan O, Liu Y, Clough SJ"
   "Mol Plant Microbe Interact (2011) 24:958-972


2. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153