Stem-loop gma-MIR5036

Accession

MI0017909

Description

Glycine max gma-MIR5036 precursor miRNA

Sequence

agggguugauuguucacucucccucaagggcuucucgcuuuaacauccaagaacaagacuAGAGGCCCUUGGGGAGGAGUAAauaagcuguuccuuauauauauauauauauauaacacaaagaaguucaucuuguuucucaccuucauaa
(((((.(((....)))...)))))..(((((.....))))).........((((((((...(((...(((.(((((.(((......))).)))))((((((((....)))))))).....)))...))).)))))))).............

Structure

agggguugauuguucacucucccucaagggcuucucgcuuuaacauccaa        cuA   GCC   ------------------------G     G   AA 
                                                  gaacaaga   GAG   CUU                         GGGAG AGU  a
                                                  ||||||||   |||   |||                         ||||| |||   
                                                  uuuguucu   cuu   gaa                         uccuu ucg  u
-------------------------------------aauacuuccacuc        --a   gaa   acacaauauauauauauauauauau     g   aa 

Annotation confidence Not enough data

Genome context

chr8: 1774168-1774318 [+]

Mature gma-miR5036

• Accession: MIMAT0021059
• Description: Glycine max gma-miR5036 mature miRNA
• Sequence: 61 - AGAGGCCCUUGGGGAGGAGUAA - 82
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21751852
   Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
   "Radwan O, Liu Y, Clough SJ"
   "Mol Plant Microbe Interact (2011) 24:958-972