Stem-loop gma-MIR5036

Accession

MI0017909

Description

Glycine max gma-MIR5036 precursor miRNA

Sequence

53956 reads, 3199.0 reads per million, 177 experiments

agggguugauuguucacucucccucaagggcuucucgcuuuaacauccaagaacaagacuAGAGGCCCUUGGGGAGGAGUAAauaagcuguuccUUAUAUAUAUAUAUAUAUauaacacaaagaaguucaucuuguuucucaccuucauaa
(((((.(((....)))...)))))..(((((.....))))).........((((((((...(((...(((.(((((.(((......))).)))))((((((((....)))))))).....)))...))).)))))))).............

Structure

agggguugauuguucacucucccucaagggcuucucgcuuuaacauccaa        cuA   GCC   GGGGAGGAGUAAauaagcuguuccU        U 
                                                  gaacaaga   GAG   CUU                         UAUAUAUA A
                                                  ||||||||   |||   |||                         ||||||||  
                                                  uuuguucu   cuu   gaa                         auaUAUAU U
-------------------------------------aauacuuccacuc        --a   gaa   --------------------acaca        A 

Annotation confidence Low

Genome context

chr8: 1774168-1774318 [+]

Mature gma-miR5036-5p

• Accession: MIMAT0021059
• Description: Glycine max gma-miR5036-5p mature miRNA
• Sequence: 61 - AGAGGCCCUUGGGGAGGAGUAA - 82
• Evidence: experimental ; SOLiD [1]

Mature gma-miR5036-3p

• Accession: MIMAT0054208
• Description: Glycine max gma-miR5036-3p mature miRNA
• Sequence: 95 - UUAUAUAUAUAUAUAUAU - 112
• Evidence: experimental ; unknown

References

1. PubMed ID: 21751852
   Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
   "Radwan O, Liu Y, Clough SJ"
   "Mol Plant Microbe Interact (2011) 24:958-972