Stem-loop gma-MIR5039

Accession

MI0017916

Description

Glycine max gma-MIR5039 precursor miRNA

Literature search

1 open access papers mention gma-MIR5039
(1 sentences)

Sequence

2960 reads, 104.0 reads per million, 163 experiments

uuacacauucagguacaaaaaugacuauuuauccaaaauauaauuuaauauucauuuucuCCCUUUUUUAAUCGUUGCAUGcauaacauuacaauaaucacuuguaacgAUUAAAAAAAAGGAGAAAAgaugaagauuaaauuauauuuug
...........(((.((....))))).......((((((((((((((((.((((((((((((.((((((((((((((((.......................))))))))))))))))..))))))..)))))).))))))))))))))))

Structure

uuacacauucagguacaaaaaugacuauuuauc                a      --      -C                UGcauaacau 
                                 caaaauauaauuuaau uucauu  uucuCC  UUUUUUAAUCGUUGCA          u
                                 |||||||||||||||| ||||||  ||||||  ||||||||||||||||          a
                                 guuuuauauuaaauua aaguag  AAGAGG  AAAAAAUUAgcaaugu          c
---------------------------------                g      AA      AA                ucacuaauaa 

Annotation confidence Low

Genome context

chr12: 32675496-32675646 [+]

Mature gma-miR5039-5p

• Accession: MIMAT0021066
• Description: Glycine max gma-miR5039-5p mature miRNA
• Sequence: 61 - CCCUUUUUUAAUCGUUGCAUG - 81
• Evidence: experimental ; SOLiD [1]

Mature gma-miR5039-3p

• Accession: MIMAT0054213
• Description: Glycine max gma-miR5039-3p mature miRNA
• Sequence: 110 - AUUAAAAAAAAGGAGAAAA - 128
• Evidence: experimental ; unknown

References

1. PubMed ID: 21751852
   Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
   "Radwan O, Liu Y, Clough SJ"
   "Mol Plant Microbe Interact (2011) 24:958-972