Stem-loop gma-MIR5040

Accession

MI0017917

Description

Glycine max gma-MIR5040 precursor miRNA

Sequence

25122 reads, 85.0 reads per million, 178 experiments

uaguuuggauaauaagcuuuuuagauaggaaacucaaugagaauauuacugauugaaggucAUGAUAUAUAACAAGCAUGAGgauauaaauguuauauacaaugUUGUUGUGUUUGGUUGAUAgugaaucuaaugaaccgggggaaugaaa
.((((((.....))))))..((((((.......(((((.((.......)).)))))...((((..(((....(((((((((.(((((...(((.....)))))))).)))))))))....)))))))))))))..................

Structure

uaguuuggauaauaagcuuu      aggaaacucaaugagaauauuacugauugaagg    GA   AUAA         G     aaa   u 
                    uuagau                                 ucAU  UAU    CAAGCAUGA gauau   ugu a
                    ||||||                                 ||||  |||    ||||||||| |||||   ||| u
                    aaucua                                 agug  AUA    GUUUGUGUU UUgua   aca a
--aaaguaagggggccaagu      ---------------------------------    --   GUUG         G     ---   u 

Annotation confidence Low

Genome context

chr12: 37310768-37310918 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR5040

Mature gma-miR5040-5p

• Accession: MIMAT0021067
• Description: Glycine max gma-miR5040-5p mature miRNA
• Sequence: 62 - AUGAUAUAUAACAAGCAUGAG - 82
• Evidence: experimental ; SOLiD [1]

Mature gma-miR5040-3p

• Accession: MIMAT0054214
• Description: Glycine max gma-miR5040-3p mature miRNA
• Sequence: 105 - UUGUUGUGUUUGGUUGAUA - 123
• Evidence: experimental ; unknown

References

1. PubMed ID: 21751852
   Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
   "Radwan O, Liu Y, Clough SJ"
   "Mol Plant Microbe Interact (2011) 24:958-972