Stem-loop gma-MIR5041

Accession

MI0017920

Description

Glycine max gma-MIR5041 precursor miRNA

Literature search

2 open access papers mention gma-MIR5041
(2 sentences)

Sequence

36721 reads, 271.0 reads per million, 178 experiments

agaaacuuaaaguuguuggugcuagcaccaaucaaguguccuuuccgcguucucgaaaacuuuCAUCUUCAACUUGCUCAACGGUacacucaaguauaaucauaucGUUGAGCAAGUUGAAGAUGAAuguugucgggaaccgaauguccau
.((((.....(.(((((((((....)))))).))).)....))))((.((((((((.(((.(((((((((((((((((((((((((................))))))))))))))))))))))))).))).)))))))))).........

Structure

agaaacuuaaaguuguuggugcuagcaccaaucaaguguccuuuc  c        a   u                         cacucaa 
                                             cg guucucga aac uuCAUCUUCAACUUGCUCAACGGUa       g
                                             || |||||||| ||| |||||||||||||||||||||||||        
                                             gc caagggcu uug AAGUAGAAGUUGAACGAGUUGcuau       u
------------------------------------uaccuguaa  -        g   u                         acuaaua 

Annotation confidence High

Genome context

chr16: 30479426-30479576 [+]

Mature gma-miR5041-5p

• Accession: MIMAT0021070
• Description: Glycine max gma-miR5041-5p mature miRNA
• Sequence: 64 - CAUCUUCAACUUGCUCAACGGU - 85
• Evidence: experimental ; SOLiD [1]

Mature gma-miR5041-3p

• Accession: MIMAT0032122
• Description: Glycine max gma-miR5041-3p mature miRNA
• Sequence: 107 - GUUGAGCAAGUUGAAGAUGAA - 127
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21751852
   Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
   "Radwan O, Liu Y, Clough SJ"
   "Mol Plant Microbe Interact (2011) 24:958-972


2. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153