Stem-loop gma-MIR5042

Accession

MI0017922

Description

Glycine max gma-MIR5042 precursor miRNA

Sequence

aaagaugcaaaauuuucaaguguucaaguguugacaacuauuuuuagcuuucaaacccccUAUCUUGGAUCACAGCCCCAUUgccuaucauggggcuuggagUGGGGCUUGAUCCAAGAUAGGaagcuggaaagcuugaaaguaugaacug
...........((((((((((.....(((.......))).((((((((((........((((((((((((((.(((((((((((((......))))....)))))))))))))))))))))))))))))))))))))))))))........

Structure

aaagaugcaaa          guucaaguguugacaacua          ucaaaccc              C         ----    au 
           auuuucaagu                   uuuuuagcuu        ccUAUCUUGGAUCA AGCCCCAUU    gccu  c
           ||||||||||                   ||||||||||        |||||||||||||| |||||||||    ||||   
           ugaaaguucg                   aaaggucgaa        GGAUAGAACCUAGU UCGGGGUga    cggg  a
---gucaagua          -------------------          --------              -         gguu    gu 

Annotation confidence Not enough data

Genome context

chr18: 10449468-10449618 [+]

Mature gma-miR5042-5p

• Accession: MIMAT0021072
• Description: Glycine max gma-miR5042-5p mature miRNA
• Sequence: 61 - UAUCUUGGAUCACAGCCCCAUU - 82
• Evidence: experimental ; SOLiD [1]

Mature gma-miR5042-3p

• Accession: MIMAT0032123
• Description: Glycine max gma-miR5042-3p mature miRNA
• Sequence: 103 - UGGGGCUUGAUCCAAGAUAGG - 123
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21751852
   Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
   "Radwan O, Liu Y, Clough SJ"
   "Mol Plant Microbe Interact (2011) 24:958-972


2. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153