Stem-loop gma-MIR5043

Accession

MI0017924

Description

Glycine max gma-MIR5043 precursor miRNA

Sequence

13493 reads, 48.0 reads per million, 177 experiments

cgacgacgaccgccgcguucauguccauuucccacaaccuuaaaaccggcggcaucuuggUGUCCCCUUCUCUGCACCACCcuuccucaagauggugcauagaaggggacaccaugaugccGAGAAGGGUAAAUAAUGUcccacaaccuua
.((((.((.....)))))).......(((((((....((........))(((((((.((((((((((((((.(((((((..(((....))).))))))).)))))))))))))).)))))))....))).)))).................

Structure

cgacgacgaccgccgcguucaugucc    -   acaaccuuaaaaccgg       u              C       CC   c 
                          auuu ccc                cggcauc uggUGUCCCCUUCU UGCACCA  cuu c
                          |||| |||                ||||||| |||||||||||||| |||||||  |||  
                          UAAA GGG                Gccguag accacaggggaaga acguggu  gaa u
---------auuccaacacccUGUAA    U   ------------AAGA       u              u       -a   c 

Annotation confidence Low

Genome context

chr20: 46967498-46967648 [+]

Mature gma-miR5043-5p

• Accession: MIMAT0021074
• Description: Glycine max gma-miR5043-5p mature miRNA
• Sequence: 61 - UGUCCCCUUCUCUGCACCACC - 81
• Evidence: experimental ; SOLiD [1]

Mature gma-miR5043-3p

• Accession: MIMAT0054218
• Description: Glycine max gma-miR5043-3p mature miRNA
• Sequence: 122 - GAGAAGGGUAAAUAAUGU - 139
• Evidence: experimental ; unknown

References

1. PubMed ID: 21751852
   Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
   "Radwan O, Liu Y, Clough SJ"
   "Mol Plant Microbe Interact (2011) 24:958-972