Stem-loop hvu-MIR5048a

Accession

MI0017935

Description

Hordeum vulgare hvu-MIR5048a precursor miRNA

Literature search

5 open access papers mention hvu-MIR5048a
(27 sentences)

Sequence

ucuagcaauaUAUUUGCAGGUUUUAGGUCUAAguggugaauaucgaucucugaauauauugauaaccuucacaaauuugcugauuauuuuuguagcgcucuuucaugagaaaugauugucccacaugcauauccaugacuaaaaaaagcaaaaaaguaauaauuggguguuguguucucacaaagaaagauggaaaaguuuaacaaaaacuugugaaggaagaugaaugcuuugauuaugcaugaauccauaaugauaaagugcuauugaaugaucaaguaauuuguaagguuuuuauuaucuucgcaagaguuguauuguuaauuuagaccuagacaugcaaguauauuucuagg
.((((.((((((((((((.((((.((((((((((....((((.(((.(((((((.(((.(((.((((((.(((((((.(((((((((((..((((((((...(((((.((.(((..(((...)))..))).)))))))((((.....((......)).....))))...(((((....)))))............((((((.....)))))).........(((..((((.........))))..)))...........)))))))).)))))))).)))))))))))))))).))).))).)))...)))))))))))....)))))))))))))).)))))))))))).)))).

Structure

u    c            G    U          ggug    u   u    ---   u   u   u      c       u   -        uu        ----------------------------------------------------------------------------------------------------------------------cuu     a  a   au   c 
 cuag aauaUAUUUGCA GUUU AGGUCUAAgu    aaua cga cucu   gaa aua uga aaccuu acaaauu gcu gauuauuu  guagcgcu                                                                                                                         ucaug ga aug  ugu  
 |||| |||||||||||| |||| ||||||||||    |||| ||| ||||   ||| ||| ||| |||||| ||||||| ||| ||||||||  ||||||||                                                                                                                         ||||| || |||  ||| c
 gauc uuauaugaacgu caga uccagauuua    uuau guu gaga   cuu uau auu uuggaa uguuuaa uga cuaguaag  uaucguga                                                                                                                         aguac cu uac  aca  
g    u            a    -          auug    -   -    acg   c   u   u      -       -   a        -u        aauaguaauaccuaaguacguauuaguuucguaaguagaaggaaguguucaaaaacaauuugaaaagguagaaagaaacacucuuguguuguggguuaauaaugaaaaaacgaaaaaaauc     -  a   gu   c 

Annotation confidence Not enough data

Genome context

Unknown

Mature hvu-miR5048a

• Accession: MIMAT0020544
• Description: Hordeum vulgare hvu-miR5048a mature miRNA
• Sequence: 11 - UAUUUGCAGGUUUUAGGUCUAA - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129