Stem-loop bdi-MIR5057

Accession

MI0017947

Description

Brachypodium distachyon bdi-MIR5057 precursor miRNA

Sequence

uggcacagccaAAAUUUCAAAUCAUUUUGACAaaguuaacuugcucaaauucaugguuuaaauuugaaaaacugua
((((...))))((((((.((((((((((((..(((....)))..)))))...)))))))))))))...........

Structure

uggcacagcca      C       ---     CA   u 
           AAAUUU AAAUCAU   UUUGA  aag u
           |||||| |||||||   |||||  |||  
           uuuaaa uuuggua   aaacu  uuc a
augucaaaaag      -       cuu     cg   a 

Annotation confidence Not enough data

Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

4: 10594352-10594427 [+]

Mature bdi-miR5057

• Accession: MIMAT0020556
• Description: Brachypodium distachyon bdi-miR5057 mature miRNA
• Sequence: 12 - AAAUUUCAAAUCAUUUUGACA - 32
• Evidence: not_experimental

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129