Stem-loop ssc-mir-129b

Accession

MI0017986

Description

Sus scrofa ssc-mir-129b precursor miRNA

Literature search

4 open access papers mention ssc-mir-129b
(5 sentences)

Sequence

397291 reads, 535.0 reads per million, 203 experiments

cccuuuggauCUUUUUGCGGUCUGGGCUUGCuguuccucucuacaguagucaggAAGCCCUUACCCCAAAAAGUAucugcggga
.(((.((((((((((((.(((..((((((.(((..(..((....))..).))).))))))..))).))))))).))))).))).

Structure

c   u     -       C   CU      G   uu cu  c 
 ccu uggau CUUUUUG GGU  GGGCUU Cug  c  cu u
 ||| ||||| ||||||| |||  |||||| |||  |  ||  
 ggg gucuA GAAAAAC CCA  CCCGAA gac  g  ga a
a   c     U       C   UU      g   -u au  c 

Annotation confidence High

Genome context

chr18: 21181553-21181636 [+]

Mature ssc-miR-129b-5p

• Accession: MIMAT0020586
• Description: Sus scrofa ssc-miR-129b-5p mature miRNA
• Sequence: 11 - CUUUUUGCGGUCUGGGCUUGC - 31
• Evidence: experimental ; Illumina [1-2]

Mature ssc-miR-129b-3p

• Accession: MIMAT0052667
• Description: Sus scrofa ssc-miR-129b-3p mature miRNA
• Sequence: 55 - AAGCCCUUACCCCAAAAAGUA - 75
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


2. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100