Stem-loop ssc-mir-187

Accession

MI0017987

Description

Sus scrofa ssc-mir-187 precursor miRNA

Literature search

5 open access papers mention ssc-mir-187
(5 sentences)

Sequence

89347 reads, 33.0 reads per million, 163 experiments

ugagaccucggGCUACAACACGGGACUCGGGcgcugcucugaccccUCGUGUCUUGUGUUGCAGCCGGagggacgcag
.....((((.((((.(((((((((((.((((.((......).).)).)).))))))))))).)))).)))).......

Structure

--ugaga    g    A           U  -  c - ug 
       ccuc gGCU CAACACGGGAC CG GG g c  c
       |||| |||| ||||||||||| || || | |   
       ggaG CCGA GUUGUGUUCUG GC cc c g  u
gacgcag    G    C           U  U  c a uc 

Annotation confidence High

Genome context

chr6: 112191797-112191874 [-]

Mature ssc-miR-187-5p

• Accession: MIMAT0052668
• Description: Sus scrofa ssc-miR-187-5p mature miRNA
• Sequence: 12 - GCUACAACACGGGACUCGGG - 31
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-187-3p

• Accession: MIMAT0020587
• Description: Sus scrofa ssc-miR-187-3p mature miRNA
• Sequence: 47 - UCGUGUCUUGUGUUGCAGCCGG - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328