Stem-loop ssc-mir-190b

Accession

MI0017988

Description

Sus scrofa ssc-mir-190b precursor miRNA

Literature search

2 open access papers mention ssc-mir-190b
(5 sentences)

Sequence

22536 reads, 89.0 reads per million, 179 experiments

ugcuucugugUGAUAUGUUUGAUAUUGGGUUGuuuaauuaggaaccaACUAAAUGUCAAACAUAUUCUUacagcaguaggcaa
((((((((((((((((((((((((((.((((((((......))).))))).)))))))))))))))...))).))).))))).

Structure

-     -   -   ---               G     -   aa 
 ugcuu cug ugU   GAUAUGUUUGAUAUU GGUUG uuu  u
 ||||| ||| |||   ||||||||||||||| ||||| |||   
 acgga gac aca   UUAUACAAACUGUAA UCAac aag  u
a     u   g   UUC               A     c   ga 

Annotation confidence Medium

Genome context

chr4: 104457810-104457892 [+]

Mature ssc-miR-190b-5p

• Accession: MIMAT0020588
• Description: Sus scrofa ssc-miR-190b-5p mature miRNA
• Sequence: 11 - UGAUAUGUUUGAUAUUGGGUUG - 32
• Evidence: experimental ; Illumina [1-2]

Mature ssc-miR-190b-3p

• Accession: MIMAT0052669
• Description: Sus scrofa ssc-miR-190b-3p mature miRNA
• Sequence: 48 - ACUAAAUGUCAAACAUAUUCUU - 69
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


2. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100