Stem-loop ssc-mir-218b

Accession

MI0017989

Description

Sus scrofa ssc-mir-218b precursor miRNA

Literature search

8 open access papers mention ssc-mir-218b
(36 sentences)

Sequence

590381 reads, 745.0 reads per million, 188 experiments

gggcuuuccuUUGUGCUUGAUCUAACCAUGUGguggaacgauggaaacggaacAUGGUUCUGUCAAGCACCGCGgaaagcuccg
(((((((((...(((((((((..((((((((..((............))..))))))))..)))))))))...))))))).)).

Structure

-  -       uUU         CU        Gg  gaacg 
 gg gcuuucc   GUGCUUGAU  AACCAUGU  ug     a
 || |||||||   |||||||||  ||||||||  ||      
 cc cgaaagG   CACGAACUG  UUGGUAca  gc     u
g  u       CGC         UC        ag  aaagg 

Annotation confidence High

Genome context

chr16: 59686628-59686711 [+]

Mature ssc-miR-218b-5p

• Accession: MIMAT0020589
• Description: Sus scrofa ssc-miR-218b-5p mature miRNA
• Sequence: 11 - UUGUGCUUGAUCUAACCAUGUG - 32
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-218b-3p

• Accession: MIMAT0052670
• Description: Sus scrofa ssc-miR-218b-3p mature miRNA
• Sequence: 54 - AUGGUUCUGUCAAGCACCGCG - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328