Stem-loop ssc-mir-615

Accession

MI0017995

Description

Sus scrofa ssc-mir-615 precursor miRNA

Literature search

2 open access papers mention ssc-mir-615
(2 sentences)

Sequence

20519 reads, 21.0 reads per million, 141 experiments

gggaggggcgggagGGGGCUCCCCGGUGCUCGGAUCUcgagggugcuuauuguucggUCCGAGCCUGGGUCUCCCUCUcccccccacc
((..((((.(((((((((...(((((.((((((((..((((.(.......).)))))))))))))))))...))))))))))))).))

Structure

  ga    c         CUC     U        CU    g ug 
gg  gggg gggagGGGG   CCCGG GCUCGGAU  cgag g  c
||  |||| |||||||||   ||||| ||||||||  |||| |  u
cc  cccc cccUCUCCC   GGGUC CGAGCCUg  gcuu u  u
  -a    -         UCU     -        --    g ua 

Annotation confidence High

Genome context

chr5: 19690659-19690746 [-]

Mature ssc-miR-615-5p

• Accession: MIMAT0052676
• Description: Sus scrofa ssc-miR-615-5p mature miRNA
• Sequence: 15 - GGGGCUCCCCGGUGCUCGGAUCU - 37
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-615-3p

• Accession: MIMAT0020595
• Description: Sus scrofa ssc-miR-615-3p mature miRNA
• Sequence: 58 - UCCGAGCCUGGGUCUCCCUCU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328