Stem-loop ssc-mir-1343

Accession

MI0017996

Description

Sus scrofa ssc-mir-1343 precursor miRNA

Literature search

6 open access papers mention ssc-mir-1343
(14 sentences)

Sequence

287598 reads, 346.0 reads per million, 206 experiments

gcuucggugcUGGGGAGCGGCCCCCGGGCGGGccucugcucuggcccCUCCUGGGGCCCGCACUCUCGCuccggguccg
..(((((.((.((((.((((.(((((((.(((((........)))))..))))))).)))).)))).)).)))))....

Structure

--gc     u  U    A    C       -C     ucu 
    uucgg gc GGGG GCGG CCCCGGG  GGGcc   g
    ||||| || |||| |||| |||||||  |||||    
    gggcc CG UCUC CGCC GGGGUCC  cccgg   c
gccu     u  C    A    C       UC     ucu 

Annotation confidence High

Genome context

chr2: 28433182-28433260 [-]

Mature ssc-miR-1343-5p

• Accession: MIMAT0052677
• Description: Sus scrofa ssc-miR-1343-5p mature miRNA
• Sequence: 11 - UGGGGAGCGGCCCCCGGGCGGG - 32
• Evidence: experimental ; Illumina [1-2]

Mature ssc-miR-1343-3p

• Accession: MIMAT0020596
• Description: Sus scrofa ssc-miR-1343-3p mature miRNA
• Sequence: 48 - CUCCUGGGGCCCGCACUCUCGC - 69
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


2. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100