Stem-loop rgl-MIR5140

Accession

MI0018052

Description

Rehmannia glutinosa rgl-MIR5140 precursor miRNA

Literature search

1 open access papers mention rgl-MIR5140
(3 sentences)

Sequence

gaucguaguauccacucgagcgaucaccgguuccaccuuuguaauggguuuggcugcccuaggccuagccgaugucucugcaaauuugacgcgaacagccucuGCUGGUGAAGAUUUGGUGgagaugcgacg
..(((((...(((((.(((((..((((((((......((((((..((..(((((((((...)))..))))))..))..))))))...((.((.....)).)).)))))))).).)))))))))..)))))..

Structure

ga     gua     u    - ga        -------------uccacc      au  gu      --   c 
  ucgua   uccac cgag c  ucaccggu                   uuugua  gg  uuggcu  gcc  
  |||||   ||||| |||| |  ||||||||                   ||||||  ||  ||||||  ||| u
  agcgu   agGUG GUUU G  AGUGGUCG                   aaacgu  cu  agccga  cgg  
gc     -ag     -    A -A        ucuccgacaagcgcaguuu      cu  gu      uc   a 

Annotation confidence Not enough data

Genome context

Unknown

Mature rgl-miR5140

• Accession: MIMAT0020651
• Description: Rehmannia glutinosa rgl-miR5140 mature miRNA
• Sequence: 104 - GCUGGUGAAGAUUUGGUG - 121
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21439075
   Differential miRNA expression in Rehmannia glutinosa plants subjected to continuous cropping
   Yang Y, Chen X, Chen J, Xu H, Li J, Zhang Z
   BMC Plant Biol (2011) 11:53