Stem-loop osa-MIR5146

Accession

MI0018058

Description

Oryza sativa osa-MIR5146 precursor miRNA

Sequence

2283 reads, 10.0 reads per million, 122 experiments

uauaggugcugguucuuaaAAAAACCGAUACCUAUAGuauuuguaccgguUUUAACUAAUGAACCGGCACCUAUacuucguaaa
((((((((((((((((((..(((((((.(((...........))).)))))))...))).))))))))))))))).........

Structure

---------               -   -aA       A   CUAU 
         uauaggugcugguuc uua   AAAACCG UAC    A
         ||||||||||||||| |||   ||||||| |||    G
         aUAUCCACGGCCAAG AAU   UUUuggc aug    u
aaaugcuuc               U   CAA       c   uuua 

Annotation confidence Low

Genome context

1: 22418294-22418377 [+]

Mature osa-miR5146-5p

• Accession: MIMAT0056179
• Description: Oryza sativa osa-miR5146-5p mature miRNA
• Sequence: 20 - AAAAACCGAUACCUAUAG - 37
• Evidence: experimental ; unknown

Mature osa-miR5146-3p

• Accession: MIMAT0021091
• Description: Oryza sativa osa-miR5146-3p mature miRNA
• Sequence: 51 - UUUAACUAAUGAACCGGCACCUAU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21525786
   Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
   "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
   "RNA Biol (2011) 8:538-547