Stem-loop osa-MIR5147

Accession

MI0018059

Description

Oryza sativa osa-MIR5147 precursor miRNA

Literature search

1 open access papers mention osa-MIR5147
(1 sentences)

Sequence

10857 reads, 47.0 reads per million, 140 experiments

cuaguacucgcUCCAUCCACGAGAGUUGUACauauaacuuuuuucacagugaccaaggagaacacuaacuccucugauccauuuauucaucuauauggauucauacgcagugucguuucguuuuucccgcauaucgcgcauacgcaaccaacagccccgcccucgugcacuggugccgcaugcaugcaguugccuugccaauugcaugugcaugcucaacugguuggcugcucgggccgcguuaucaaauuaauccauccgcagccauacgauuacugcuucgaggcacaaacaaaauacguucaacucuuguggauaaacugagaaauguuaugcgcACAACUCUUGUGGAUGGAGGGaguaaug
....(((((.(((((((((((((((((((.(.((((((.(((((((..(((.((.(((((........)))))..(((((((.((......)).))))))).....((((((((((............((((...(((.....((........))..)))....))))((((((...(((((((((((((((......))))))))..)))))))...))))))(((((((..(((....((((......))))...)))))))))).)))).)))))).....)))))...........(((((.(....))))))....))))))).)))))).).))))))))))))))))))).)))))...

Structure

cuag     g                   A a      u       ------------------------------ca   a  aaggagaacacuaacuccucugauccauuuauucaucuauauggauucauac      -    uucguuuuucccgcauaucgcgcauacgcaaccaacagccccgcccucgugc      gcc       --        cc 
    uacuc cUCCAUCCACGAGAGUUGU C uauaac uuuuuca                                gug cc                                                    gcagug ucgu                                                    acuggu   gcaugca  ugcaguug  u
    ||||| ||||||||||||||||||| | |||||| |||||||                                ||| ||                                                    |||||| ||||                                                    ||||||   |||||||  ||||||||   
    augaG GAGGUAGGUGUUCUCAACA g guauug aaagagu                                cac gg                                                    cgucau agca                                                    ugguca   cguacgu  acguuaac  u
-gua     G                   c c      u       caaauagguguucucaacuugcauaaaacaaa   -  -----------------------------------------------agcuu      u    --------uaccgacgccuaccuaauuaaacuauugcgccgggcucgucggu      acu       gu        cg 

Annotation confidence Medium

Genome context

2: 17049859-17050224 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR5147

Mature osa-miR5147-5p

• Accession: MIMAT0056180
• Description: Oryza sativa osa-miR5147-5p mature miRNA
• Sequence: 12 - UCCAUCCACGAGAGUUGUAC - 31
• Evidence: experimental ; unknown

Mature osa-miR5147-3p

• Accession: MIMAT0021092
• Description: Oryza sativa osa-miR5147-3p mature miRNA
• Sequence: 339 - ACAACUCUUGUGGAUGGAGGG - 359
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21525786
   Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
   "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
   "RNA Biol (2011) 8:538-547


2. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207