Stem-loop osa-MIR2863c

Accession

MI0018060

Description

Oryza sativa osa-MIR2863c precursor miRNA

Literature search

4 open access papers mention osa-MIR2863c
(4 sentences)

Sequence

19934 reads, 97.0 reads per million, 141 experiments

ggguauuucuUGACCCACUUUAGUUCAACUAAAAugaacuaaguuucacuuuuagagagucuaaagugaaauuuaguucauUUAGUAGGACUAGAAUGGGCCAAAgaauaccca
((((((((.(((.((((.((((((((.((((((.((((((((((((((((((.(((...))))))))))))))))))))))))))).)))))))).)))).))).)))))))).

Structure

-        c   A    C        A      A                  u   g 
 ggguauuu uUG CCCA UUUAGUUC ACUAAA ugaacuaaguuucacuuu aga  
 |||||||| ||| |||| |||||||| |||||| |||||||||||||||||| ||| a
 cccauaag AAC GGGU AGAUCAGG UGAUUu acuugauuuaaagugaaa ucu  
a        A   C    A        A      -                  -   g 

Annotation confidence High

Genome context

2: 29869493-29869606 [+]

Mature osa-miR2863c-5p

• Accession: MIMAT0056181
• Description: Oryza sativa osa-miR2863c-5p mature miRNA
• Sequence: 11 - UGACCCACUUUAGUUCAACUAAAA - 34
• Evidence: experimental ; unknown

Mature osa-miR2863c-3p

• Accession: MIMAT0021093
• Description: Oryza sativa osa-miR2863c-3p mature miRNA
• Sequence: 82 - UUAGUAGGACUAGAAUGGGCCAAA - 105
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21525786
   Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
   "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
   "RNA Biol (2011) 8:538-547


2. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207