Stem-loop osa-MIR5149

Accession

MI0018064

Description

Oryza sativa osa-MIR5149 precursor miRNA

Literature search

1 open access papers mention osa-MIR5149
(1 sentences)

Sequence

37291 reads, 125.0 reads per million, 142 experiments

cauauaggucccaaaucgcaacaacuccuccaaaAUCCUACGUGGCGCUGAUGUGgcgugccacacgaacgugacguggcauuuaaaaauuuuccuuuuccuuuuuuuucuuuucuucuucucuuuuuuuuucuuuuauucucuucucuuuucucugugaccugagcaacccguguagcgguggccuauagcugcagugagagcaagaaaaggagaagaaaggaaaaaaaagagaauaaaaaagggaaaugaaaauuuuuuaagugggucucauuugucauucaauauuaugccaugucaugucugugugucauugccacaucagugccauguaagauccugGAGGAGCUGUGACGAUUUGGGAccuacaugacac
(((.((((((((((((((..(((.((((((((..(((.((((((((((((((((((((((.((((((.((((((((((((((..((((((((((.((((((((((((...........(((((((((((((((((((.(((((((.(((((((((..(((.(((.((.((((.....).))).))...))).).))..))))).))))..)))))))))))))))))))))))))).)))))))))))).))))))))))((((((.....))))))............)))))))))))))).)))))).)).)))))))))))))))))))).)))..)))))))).)))..)))))))))))))).)))....

Structure

----   a              ca   a        aa   C                    -  c      a              ---------------------------uu          c            uucuuuucuuc                   a       -c    -     ug  - c   --a  a   - g 
    cau uaggucccaaaucg  aca cuccucca  AUC UACGUGGCGCUGAUGUGgcg ug cacacg acgugacguggcau                             aaaaauuuuc uuuuccuuuuuu           uucucuuuuuuuuucuuuu uucucuu  ucuu uucuc  ug a cug   gc acc c u
    ||| ||||||||||||||  ||| ||||||||  ||| |||||||||||||||||||| || |||||| ||||||||||||||                             |||||||||| ||||||||||||           ||||||||||||||||||| |||||||  |||| |||||  || | |||   || ||| | g
    gua auccAGGGUUUAGC  UGU GAGGAGgu  uag auguaccgugacuacaccgu ac gugugu uguacuguaccgua                             uuuuuaaaag aaagggaaaaaa           aagagaaaaaaaaggaaag aagagga  agaa gagag  ac u gau   cg ugg g u
caca   c              AG   C        cc   a                    u  u      c              uuauaacuuacuguuuacucugggugaau          u            ----------u                   -       aa    c     ug  g c   auc  g   c a 

Annotation confidence Low

Genome context

3: 29756516-29756891 [-]

Mature osa-miR5149-5p

• Accession: MIMAT0056185
• Description: Oryza sativa osa-miR5149-5p mature miRNA
• Sequence: 35 - AUCCUACGUGGCGCUGAUGUG - 55
• Evidence: experimental ; unknown

Mature osa-miR5149-3p

• Accession: MIMAT0021097
• Description: Oryza sativa osa-miR5149-3p mature miRNA
• Sequence: 343 - GAGGAGCUGUGACGAUUUGGGA - 364
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21525786
   Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
   "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
   "RNA Biol (2011) 8:538-547