Stem-loop osa-MIR5150

Accession

MI0018065

Description

Oryza sativa osa-MIR5150 precursor miRNA

Literature search

5 open access papers mention osa-MIR5150
(8 sentences)

Sequence

249067 reads, 957.0 reads per million, 142 experiments

guuugggggagcUUCUGACAGCUGCAGUUUCUCUuguucuaggaGAAGCUGCAGCUGUCAGAAGCUCccccaaacaugg
((((((((((((((((((((((((((((((((((((...))))))))))))))))))))))))))))))))))))....

Structure

----                                    u 
    guuugggggagcUUCUGACAGCUGCAGUUUCUCUug  
    |||||||||||||||||||||||||||||||||||| u
    caaaccccCUCGAAGACUGUCGACGUCGAAGaggau  
ggua                                    c 

Annotation confidence High

Genome context

4: 18470790-18470868 [+]

Mature osa-miR5150-5p

• Accession: MIMAT0021098
• Description: Oryza sativa osa-miR5150-5p mature miRNA
• Sequence: 13 - UUCUGACAGCUGCAGUUUCUCU - 34
• Evidence: experimental ; Illumina [1-2]

Mature osa-miR5150-3p

• Accession: MIMAT0021099
• Description: Oryza sativa osa-miR5150-3p mature miRNA
• Sequence: 45 - GAAGCUGCAGCUGUCAGAAGCUC - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21525786
   Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
   "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
   "RNA Biol (2011) 8:538-547


2. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207