Stem-loop osa-MIR5151

Accession

MI0018066

Description

Oryza sativa osa-MIR5151 precursor miRNA

Literature search

1 open access papers mention osa-MIR5151
(2 sentences)

Sequence

94 reads, 65 reads per million, 2 experiments

guuugcuucacUAAUGAUGUGGGUACGAAUGAAcaaaaaugugacuauuuuaagcuucacuguugaugacugauggcgacacgaguaacaugaagccuaaaauagucacauuuuuguucauucguaccuacaucauuagugaagcaaac
((((((((((((((((((((((((((((((((((((((((((((((((((((.((((((.((((....(((..((....))..))))))))))))).))))))))))))))))))))))))))))))))))))))))))))))))))))

Structure

                                                    a      c    gaug   ga  g 
guuugcuucacUAAUGAUGUGGGUACGAAUGAAcaaaaaugugacuauuuua gcuuca uguu    acu  ug c
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    |||  ||  
caaacgaagugauuacuacauccaugcuuacuuguuuuuacacugauaaaau cgaagu acaa    uga  ac g
                                                    c      -    ----   gc  a 

Annotation confidence Not enough data

Genome context

Chr5: 3661490-3661638 [-]

Mature osa-miR5151

• Accession: MIMAT0021100
• Description: Oryza sativa osa-miR5151 mature miRNA
• Sequence: 12 - UAAUGAUGUGGGUACGAAUGAA - 33
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21525786
   Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
   "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
   "RNA Biol (2011) 8:538-547


2. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53