Stem-loop osa-MIR5151

Accession

MI0018066

Description

Oryza sativa osa-MIR5151 precursor miRNA

Literature search

2 open access papers mention osa-MIR5151
(3 sentences)

Sequence

37752 reads, 142.0 reads per million, 142 experiments

guuugcuucacUAAUGAUGUGGGUACGAAUGAAcaaaaaugugacuauuuuaagcuucacuguugaugacugauggcgacacgaguaacaugaagccuaaaauagucacaUUUUUGUUCAUUCGUACCUACaucauuagugaagcaaac
((((((((((((((((((((((((((((((((((((((((((((((((((((.((((((.((((....(((..((....))..))))))))))))).))))))))))))))))))))))))))))))))))))))))))))))))))))

Structure

                                                    a      c    gaug   ga  g 
guuugcuucacUAAUGAUGUGGGUACGAAUGAAcaaaaaugugacuauuuua gcuuca uguu    acu  ug c
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    |||  ||  
caaacgaagugauuacuaCAUCCAUGCUUACUUGUUUUUacacugauaaaau cgaagu acaa    uga  ac g
                                                    c      -    ----   gc  a 

Annotation confidence Low

Genome context

5: 3661490-3661638 [-]

Mature osa-miR5151-5p

• Accession: MIMAT0021100
• Description: Oryza sativa osa-miR5151-5p mature miRNA
• Sequence: 12 - UAAUGAUGUGGGUACGAAUGAA - 33
• Evidence: experimental ; Illumina [1-2]

Mature osa-miR5151-3p

• Accession: MIMAT0056186
• Description: Oryza sativa osa-miR5151-3p mature miRNA
• Sequence: 111 - UUUUUGUUCAUUCGUACCUAC - 131
• Evidence: experimental ; unknown

References

1. PubMed ID: 21525786
   Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
   "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
   "RNA Biol (2011) 8:538-547


2. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53