Stem-loop osa-MIR5152

Accession

MI0018067

Description

Oryza sativa osa-MIR5152 precursor miRNA

Sequence

4290 reads, 24.0 reads per million, 131 experiments

uaaagguagggauaggcaugaucucuuucucaccAAAUUUCUAAGACCAAACUCAACUUcguuuggaaaguuaaaauaagacaaauuuugcaugaaacuucccuaucacuauccgugcaaaguuuguauuucuuguaucuugcaagcaaauuugaauuUGGUCUUGAAAUUUUGUGGAgauauagaccaugccuauaccuaccacuaauauuuaug
....((((((..((((((((.(((...((((((.(((((((.(((((((((.((((.((.(((((.((.((..((..((.((((((((((((((...................)))))))))))))).))..))..)).)).))))).)).)))).)))))))))))))))).)).))))...))).))))))))..)))))).............

Structure

---------uaaa      ga        a   cuu    -  c       U         C    C  c     g  a  ua  au  g              aaacuucc 
             gguagg  uaggcaug ucu   ucuc ac AAAUUUC AAGACCAAA UCAA UU guuug aa gu  aa  aa acaaauuuugcaug        c
             ||||||  |||||||| |||   |||| || ||||||| ||||||||| |||| || ||||| || ||  ||  || ||||||||||||||        u
             ccaucc  auccguac aga   agAG UG UUUAAAG UUCUGGUuu aguu aa cgaac uu ua  uu  uu uguuugaaacgugc        a
guauuuauaauca      au        c   uau    G  U       -         a    u  a     g  c  ug  cu  a              cuaucacu 

Annotation confidence Medium

Genome context

5: 28910038-28910253 [-]

Mature osa-miR5152-5p

• Accession: MIMAT0021101
• Description: Oryza sativa osa-miR5152-5p mature miRNA
• Sequence: 35 - AAAUUUCUAAGACCAAACUCAACUU - 59
• Evidence: experimental ; Illumina [1-2]

Mature osa-miR5152-3p

• Accession: MIMAT0021102
• Description: Oryza sativa osa-miR5152-3p mature miRNA
• Sequence: 159 - UGGUCUUGAAAUUUUGUGGA - 178
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21525786
   Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
   "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
   "RNA Biol (2011) 8:538-547


2. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207