Stem-loop osa-MIR5153

Accession

MI0018068

Description

Oryza sativa osa-MIR5153 precursor miRNA

Literature search

1 open access papers mention osa-MIR5153
(1 sentences)

Sequence

10512 reads, 42.0 reads per million, 140 experiments

ccacgauaguguauacguguuaguuggacucacgugcuagucacauagaauaaaauauaauuagaaaaacauAUUUUCUCCUCUCUACCUuauaauuuuuaucuuuuuucugucuaccuaagaggagaaaauaugguuuuuaauuuuaauuuuuauauauguuugacaugUGGAUUCCACUGACACGUAGACGUcaccguggcauu
(((((....(((.(((((((((((.(((.(((((((.(((..(((((..((((((...(((((((((..(((((((((((((((....................................))))))))))))))).))))))))).....)))))).)))))))).)))))))..)))))))))))))).)))....)))))....

Structure

----     auag   a           u   -c       c   uc     ga      --uau         aa               CUACCUuauaauuuuua 
    ccacg    ugu uacguguuagu gga  ucacgug uag  acaua  auaaaa     aauuagaaa  cauAUUUUCUCCUCU                 u
    |||||    ||| ||||||||||| |||  ||||||| |||  |||||  ||||||     |||||||||  |||||||||||||||                  
    ggugc    GCA AUGCACAGUCA CCU  GGUguac guu  uguau  uauuuu     uuaauuuuu  guauaaaagaggaga                 c
uuac     cacU   G           -   UA       a   --     -a      uaauu         -g               auccaucugucuuuuuu 

Annotation confidence Low

Genome context

5: 2518353-2518558 [+]

Mature osa-miR5153-5p

• Accession: MIMAT0056187
• Description: Oryza sativa osa-miR5153-5p mature miRNA
• Sequence: 73 - AUUUUCUCCUCUCUACCU - 90
• Evidence: experimental ; unknown

Mature osa-miR5153-3p

• Accession: MIMAT0021103
• Description: Oryza sativa osa-miR5153-3p mature miRNA
• Sequence: 171 - UGGAUUCCACUGACACGUAGACGU - 194
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21525786
   Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
   "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
   "RNA Biol (2011) 8:538-547