Stem-loop osa-MIR5154

Accession

MI0018069

Description

Oryza sativa osa-MIR5154 precursor miRNA

Sequence

18 reads, 12 reads per million, 2 experiments

uuagacaucucagcaccaaauagcacggcgcuggauauacguuggcaugccgacucagccucccaucuguaguggcacggcauucAGCACCAGUUGACGUGACGCUGAGgugucuaaguug
((((((((((((((..((..((((..((.(((((((....((((...((((.((((((........))).)))))))))))))))))).)).))))...))..))))))))))))))....

Structure

----              ac  -aa    ac  c       auac    gca    g   -   ccu 
    uuagacaucucagc  ca   uagc  gg gcuggau    guug   ugcc acu cag   c
    ||||||||||||||  ||   ||||  || |||||||    ||||   |||| ||| |||    
    aaucugugGAGUCG  GU   GUUG  CC CGAcuua    cggc   acgg uga guc   c
guug              CA  GCA    -A  A       ----    ---    -   u   uac 

Annotation confidence Not enough data

Genome context

Chr6: 5263432-5263552 [+]

Mature osa-miR5154

• Accession: MIMAT0021104
• Description: Oryza sativa osa-miR5154 mature miRNA
• Sequence: 86 - AGCACCAGUUGACGUGACGCUGAG - 109
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21525786
   Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
   "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
   "RNA Biol (2011) 8:538-547