Stem-loop osa-MIR5154

Accession

MI0018069

Description

Oryza sativa osa-MIR5154 precursor miRNA

Sequence

21079 reads, 55.0 reads per million, 140 experiments

uuagacaucucagcaccaaauagcacggcgcuggauAUACGUUGGCAUGCCGACUCAGCCucccaucuguaguggcacggcauucAGCACCAGUUGACGUGACGCUGAGgugucuaaguug
((((((((((((((..((..((((..((.(((((((....((((...((((.((((((........))).)))))))))))))))))).)).))))...))..))))))))))))))....

Structure

----              ac  -aa    ac  c       AUAC    GCA    G   -   CCu 
    uuagacaucucagc  ca   uagc  gg gcuggau    GUUG   UGCC ACU CAG   c
    ||||||||||||||  ||   ||||  || |||||||    ||||   |||| ||| |||    
    aaucugugGAGUCG  GU   GUUG  CC CGAcuua    cggc   acgg uga guc   c
guug              CA  GCA    -A  A       ----    ---    -   u   uac 

Annotation confidence Low

Genome context

6: 5263432-5263552 [+]

Mature osa-miR5154-5p

• Accession: MIMAT0056188
• Description: Oryza sativa osa-miR5154-5p mature miRNA
• Sequence: 37 - AUACGUUGGCAUGCCGACUCAGCC - 60
• Evidence: experimental ; unknown

Mature osa-miR5154-3p

• Accession: MIMAT0021104
• Description: Oryza sativa osa-miR5154-3p mature miRNA
• Sequence: 86 - AGCACCAGUUGACGUGACGCUGAG - 109
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21525786
   Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
   "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
   "RNA Biol (2011) 8:538-547