Stem-loop osa-MIR5155

Accession

MI0018070

Description

Oryza sativa osa-MIR5155 precursor miRNA

Literature search

1 open access papers mention osa-MIR5155
(1 sentences)

Sequence

5926 reads, 29.0 reads per million, 94 experiments

aguuccugguacACUUUAAUACCAUUGGAAGAUUGCaccauuuaaguuucuuuuuuuuuguuacugugguuuuuugcaugaaaaaaaagaaagaacagguaaugcuaaacaguaauagauaaguggaugggaugguaaccaacuauguuguguUAUCUUUCGGUGGUAUUAAAGUGUaucagaagcu
((((.((((((((((((((((((((((((((((.(((((((((.....(((.(((.(((((((((((......((((.((...............)).))))......))))))))))).))).)))..)))))))...((((...)))).)).)))))))))))))))))))))))))))).))))

Structure

    c                            U  ---------------       aaguu   u   u           gguuuu    a  aaaaaa 
aguu cugguacACUUUAAUACCAUUGGAAGAU GC               accauuu     ucu uuu uuuguuacugu      uugc ug      a
|||| |||||||||||||||||||||||||||| ||               |||||||     ||| ||| |||||||||||      |||| ||      a
ucga gacuaUGUGAAAUUAUGGUGGCUUUCUA ug               ugguagg     agg gaa agauaaugaca      aaug ac      g
    a                            U  uguuguaucaaccaa       ---gu   u   u           aaucgu    g  aagaaa 

Annotation confidence Low

Genome context

8: 9179446-9179632 [-]

Mature osa-miR5155-5p

• Accession: MIMAT0021105
• Description: Oryza sativa osa-miR5155-5p mature miRNA
• Sequence: 13 - ACUUUAAUACCAUUGGAAGAUUGC - 36
• Evidence: experimental ; Illumina [1]

Mature osa-miR5155-3p

• Accession: MIMAT0056189
• Description: Oryza sativa osa-miR5155-3p mature miRNA
• Sequence: 154 - UAUCUUUCGGUGGUAUUAAAGUGU - 177
• Evidence: experimental ; unknown

References

1. PubMed ID: 21525786
   Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
   "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
   "RNA Biol (2011) 8:538-547