Stem-loop osa-MIR5156

Accession

MI0018071

Description

Oryza sativa osa-MIR5156 precursor miRNA

Literature search

2 open access papers mention osa-MIR5156
(12 sentences)

Sequence

9937 reads, 38.0 reads per million, 137 experiments

ucgugaggcaaaAGCCUGUAAAACUGCAAAAAGGAAcauuaucucuccucucuccccuaguguuaccgggacucccgugucuaagaaaaauuugccgcgucgacacgcauccccgugucgauguguaucagacgcgggacgacgcgcaucggacacugcuagcgcgaguccaaguccaaaaggagaguugcaaucgcugcugcugugcugcaaggugaaguaauaaagcucuagcagcaguccuguaguguguagggauaaagcaugugggagagagagagcaggugagggagagaggagagagaAUGUCCUUUUUGCAGUUUUGCaggcuuuugccucacac
..(((((((((((((((((((((((((((((((((.((((.((((((((((((((((...((((..(....(((((((((((..........(.(((((((((.(((((((........))))))).)).))))))).)..((((((((.((((.(((((((.((.........(((....)))..(((((..(((((..(((......))).))))).)))))...)).)))))))..)))).)).))))))..))))).......))))))...)..))))...).))))))))))))))).)))))))))))))))))))))))))))))))))))))..

Structure

uc                                 A    a               - uag    ac ggga      -------     aagaaaaauuugccgcgucgacacgcauccccgugucgauguguaucagacgcgggacg      -  c    -a       c  gaguccaaguccaaaaggagaguugcaauc 
  gugaggcaaaAGCCUGUAAAACUGCAAAAAGGA cauu ucucuccucucuccc c   uguu  c    cucccg       ugucu                                                           acgcgc au ggac  cugcuag gc                              g
  ||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |   ||||  |    ||||||       |||||                                                           |||||| || ||||  ||||||| ||                               
  cacuccguuuucggaCGUUUUGACGUUUUUCCU GUAa agagaggagagaggg g   acga  g    gagggu       auagg                                                           ugugug ug ccug  gacgauc cg                              c
ca                                 -    g               a ugg    ga -aga      guacgaa     ---------------------------------------------------------ga      a  u    ac       u  aaauaaugaaguggaacgucgugucgucgu 

Annotation confidence Low

Genome context

8: 16955761-16956103 [-]

Mature osa-miR5156-5p

• Accession: MIMAT0021106
• Description: Oryza sativa osa-miR5156-5p mature miRNA
• Sequence: 13 - AGCCUGUAAAACUGCAAAAAGGAA - 36
• Evidence: experimental ; Illumina [1]

Mature osa-miR5156-3p

• Accession: MIMAT0056190
• Description: Oryza sativa osa-miR5156-3p mature miRNA
• Sequence: 306 - AUGUCCUUUUUGCAGUUUUGC - 326
• Evidence: experimental ; unknown

References

1. PubMed ID: 21525786
   Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
   "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
   "RNA Biol (2011) 8:538-547