Stem-loop osa-MIR5158

Accession

MI0018074

Description

Oryza sativa osa-MIR5158 precursor miRNA

Literature search

2 open access papers mention osa-MIR5158
(4 sentences)

Sequence

7218 reads, 25.0 reads per million, 140 experiments

ucagaguaauUCGUCCUCAUCCCAAUGCUCGUCaucuacgguuggaaaaagccaugaacuuuauguggcauaacggcucaccucuauggguacacaguguggaagcggacaaagucucuagcucacaaagaugaguggagaugacuuuguccgcuuccgcucggucugccugcauuggagaaccguugugccguguaaagggcaugaauucuuccaguuguugaugauggUGAGCCACUGGGAUGAGGAUGAAUacuccgacaaca
((.(((((.(((((((((((((((..((((((((((.((((((((((.((..((((..((((((((((((((((((.((.((.....(((((.((.(.(((((((((((((((((((((.(((((......)))))..))).)))))))))))))))))).).)).))))).....)).)).))))))))))))))))))..))))..)).)))))))))).))))))...))))...)))))))))))))))))))).)).....

Structure

-----  a     a               -AU    ---      u          a  gc    aa                  c  a  ucuau     c  a u                  -   -a     ca 
     uc gagua uUCGUCCUCAUCCCA   GCUC   GUCauc acgguuggaa aa  caug  cuuuauguggcauaacgg uc cc     gggua ac g guggaagcggacaaaguc ucu  gcuca  a
     || ||||| |||||||||||||||   ||||   |||||| |||||||||| ||  ||||  |||||||||||||||||| || ||     ||||| || | |||||||||||||||||| |||  |||||   
     ag cucaU AAGUAGGAGUAGGGU   CGAG   uaguag uguugaccuu uu  guac  gaaaugugccguguugcc ag gg     uccgu ug c cgccuucgccuguuucag aga  ugagu  a
acaac  c     -               CAC    Ugg      u          c  aa    gg                  a  a  uuacg     c  g u                  u   gg     ag 

Annotation confidence Medium

Genome context

8: 23993370-23993635 [+]

Mature osa-miR5158-5p

• Accession: MIMAT0056191
• Description: Oryza sativa osa-miR5158-5p mature miRNA
• Sequence: 11 - UCGUCCUCAUCCCAAUGCUCGUC - 33
• Evidence: experimental ; unknown

Mature osa-miR5158-3p

• Accession: MIMAT0021111
• Description: Oryza sativa osa-miR5158-3p mature miRNA
• Sequence: 231 - UGAGCCACUGGGAUGAGGAUGAAU - 254
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21525786
   Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
   "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
   "RNA Biol (2011) 8:538-547