Stem-loop osa-MIR5159

Accession

MI0018075

Description

Oryza sativa osa-MIR5159 precursor miRNA

Literature search

1 open access papers mention osa-MIR5159
(1 sentences)

Sequence

37601 reads, 145.0 reads per million, 135 experiments

ugUACCUGUUGACUGACUCUGGUUCAacaaaaccaauuuuacuuuuguugAACUAGAGUGGGUCAACGGGUACCca
.(((((((((((((.(((((((((((((((((..........))))))))))))))))).)))))))))))))...

Structure

--u             G                 ccaa 
   gUACCUGUUGACU ACUCUGGUUCAacaaaa    u
   ||||||||||||| |||||||||||||||||     
   CAUGGGCAACUGG UGAGAUCAAguuguuuu    u
acC             G                 cauu 

Annotation confidence High

Genome context

11: 11920712-11920787 [+]

Mature osa-miR5159-5p

• Accession: MIMAT0056192
• Description: Oryza sativa osa-miR5159-5p mature miRNA
• Sequence: 3 - UACCUGUUGACUGACUCUGGUUCA - 26
• Evidence: experimental ; unknown

Mature osa-miR5159-3p

• Accession: MIMAT0021112
• Description: Oryza sativa osa-miR5159-3p mature miRNA
• Sequence: 51 - AACUAGAGUGGGUCAACGGGUACC - 74
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21525786
   Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
   "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
   "RNA Biol (2011) 8:538-547


2. PubMed ID: 22158467
   Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
   "Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ"
   "Plant Cell (2011) 23:4185-4207