Stem-loop osa-MIR5160

Accession

MI0018076

Description

Oryza sativa osa-MIR5160 precursor miRNA

Literature search

1 open access papers mention osa-MIR5160
(4 sentences)

Sequence

17834 reads, 62.0 reads per million, 142 experiments

cuuuuugcAGAAAUAUACCGUCGAUCUCacauaaccauugagcaugacgucgugggcgguaucgugcagggaaagccggucucgcugauugaaauagcgauaccggacugccaccgauucaauuagugauuaauuaucaugauuagcgauuaauuaauuaauuauuaaucacuaaucaggauaauuagucacuaaauauuauuaguuaauaguuaauuagguaauuaaucacuaauuaaaaaguggagaucauugcaucagugagacagugucgcuguuucaaucagcgagaccgcucuuccguuccgcgagacugcgcggucucgcccuuuugcgcaacgguugugCGAGAUCGAUGGUAUAUUUCUGcaaaacaauuu
..((((((((((((((((((((((((((.(((((((.(((.(((.((......((((((.((((((((((((((((.(((((((((((((((((((((((((((((.......)))......((((((((((((((((.(((((((.(((((((.........))))))).))))))).)))))))))))))))).....((((.(((((.....))))).))))....((((........))))....((((((...))))))....))))))))))))))))))))))))))))).))))...........))))))))).)))))))).))).))).))))))).))))))))))))))))))))))))))......

Structure

----cu                          a       a   a   u  cgucgu      u         -----------    -   c                          ------------------------------------------------------cggacugccaccgauucaa                a       c       uaa 
      uuuugcAGAAAUAUACCGUCGAUCUC cauaacc uug gca ga      gggcgg aucgugcag           ggaa agc ggucucgcugauugaaauagcgauac                                                                         uuagugauuaauuauc ugauuag gauuaau   u
      |||||||||||||||||||||||||| ||||||| ||| ||| ||      |||||| |||||||||           |||| ||| ||||||||||||||||||||||||||                                                                         |||||||||||||||| ||||||| |||||||   u
      aaaacGUCUUUAUAUGGUAGCUAGAG guguugg aac cgu uu      cccgcu uggcgcguc           ccuu ucg ccagagcgacuaacuuugucgcugug                                                                         aaucacugauuaauag acuaauc cuaauua   a
uuuaac                          C       c   g   u  ------      c         agagcgccuug    c   -                          acagagugacuacguuacuagaggugaaaaauuaaucacuaauuaauggauuaauugauaauugauuauuaua                g       a       uua 

Annotation confidence Low

Genome context

12: 2039472-2039851 [-]

Mature osa-miR5160-5p

• Accession: MIMAT0056193
• Description: Oryza sativa osa-miR5160-5p mature miRNA
• Sequence: 9 - AGAAAUAUACCGUCGAUCUC - 28
• Evidence: experimental ; unknown

Mature osa-miR5160-3p

• Accession: MIMAT0021113
• Description: Oryza sativa osa-miR5160-3p mature miRNA
• Sequence: 348 - CGAGAUCGAUGGUAUAUUUCUG - 369
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21525786
   Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
   "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
   "RNA Biol (2011) 8:538-547