Stem-loop osa-MIR5161

Accession

MI0018077

Description

Oryza sativa osa-MIR5161 precursor miRNA

Literature search

3 open access papers mention osa-MIR5161
(5 sentences)

Sequence

5271 reads, 21.0 reads per million, 141 experiments

uucuagaauauacuaCCUCUGUUCCAAAAUAUAAgcauuuccaggauucaaaucuuguuccacaauauaagcauuucuaccacuauuuacaccacuacuugucccaucaaucacuuuccauccaauuuuuuccccauccaacccccaacccccaaccccccuaacucucccucauuuauugaggggcaccaagucuuuuuuccucaaccuuaaucuuugcuaaacaaccuagaaaugcuuauauUCUGGAUCAGAGGGAGUAUAugauaguucacu
..(((..(((((((.((((((.((((.((((((((((((((.(((....(((((((((........))))).))))......................(((......)))..........................................................((((((.....))))))(((..(((.....................)))))).......))).)))))))))))))).)))).)))))).)))))))..)))......

Structure

----uu   ga       a      U    A              c   ---------------------------------------------------------------------------------------------------------------------------------------------------auuc    -     ucc 
      cua  auauacu CCUCUG UCCA AAUAUAAgcauuuc agg                                                                                                                                                       aaau cuugu   a
      |||  ||||||| |||||| |||| |||||||||||||| |||                                                                                                                                                       |||| |||||    
      gau  uAUAUGA GGAGAC AGGU Uuauauucguaaag ucc                                                                                                                                                       uuua gaaua   c
ucacuu   ag       G      U    C              a   aacaaaucguuucuaauuccaacuccuuuuuucugaaccacggggaguuauuuacucccucucaauccccccaacccccaacccccaaccuaccccuuuuuuaaccuaccuuucacuaacuacccuguucaucaccacauuuaucaccauc    c     uaa 

Annotation confidence Low

Genome context

12: 12083553-12083828 [+]

Mature osa-miR5161-5p

• Accession: MIMAT0056194
• Description: Oryza sativa osa-miR5161-5p mature miRNA
• Sequence: 16 - CCUCUGUUCCAAAAUAUAA - 34
• Evidence: experimental ; unknown

Mature osa-miR5161-3p

• Accession: MIMAT0021114
• Description: Oryza sativa osa-miR5161-3p mature miRNA
• Sequence: 245 - UCUGGAUCAGAGGGAGUAUA - 264
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21525786
   Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
   "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
   "RNA Biol (2011) 8:538-547