Stem-loop osa-MIR5162

Accession

MI0018078

Description

Oryza sativa osa-MIR5162 precursor miRNA

Literature search

1 open access papers mention osa-MIR5162
(1 sentences)

Sequence

1903 reads, 10.0 reads per million, 134 experiments

ucauuuuuguccAAAUGACCAAAAUACCCCUAGAACaaaaauuuccgaaauuuggauaaaauuaucaaaauaucauauuauuaacauaagcuuguaagcauccaaaauuuggccaaaaacuuaaaaucugacauuucagaauuuuugucccAGGGGUAUUUUGGUCAUUUugacaaauuugu
.((..((((((.(((((((((((((((((((.(.((((((((..(((((.(((((((...........((((......)))).......(((....)))))))))).)))))..............(((((....))))))))))))).).))))))))))))))))))).))))))..)).

Structure

u  uu      c                   A A        --------------------------uu     a       aaaauuaucaaaauaucaua 
 ca  uuuguc AAAUGACCAAAAUACCCCU G ACaaaaau                            ccgaa uuuggau                    u
 ||  |||||| ||||||||||||||||||| | ||||||||                            ||||| |||||||                     
 gu  aaacag UUUACUGGUUUUAUGGGGA c uguuuuua                            gguuu aaaccua                    u
u  uu      u                   c c        agacuuuacagucuaaaauucaaaaacc     a       cgaauguucgaauacaauua 

Annotation confidence Medium

Genome context

12: 16421196-16421377 [+]

Mature osa-miR5162-5p

• Accession: MIMAT0021115
• Description: Oryza sativa osa-miR5162-5p mature miRNA
• Sequence: 13 - AAAUGACCAAAAUACCCCUAGAAC - 36
• Evidence: experimental ; Illumina [1]

Mature osa-miR5162-3p

• Accession: MIMAT0056195
• Description: Oryza sativa osa-miR5162-3p mature miRNA
• Sequence: 152 - AGGGGUAUUUUGGUCAUUU - 170
• Evidence: experimental ; unknown

References

1. PubMed ID: 21525786
   Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
   "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
   "RNA Biol (2011) 8:538-547