Stem-loop bdi-MIR399b

Accession

MI0018103

Description

Brachypodium distachyon bdi-MIR399b precursor miRNA

Literature search

3 open access papers mention bdi-MIR399b
(10 sentences)

Sequence

428 reads, 4.0 reads per million, 20 experiments

cguguuauugagaugagggugagaauuacaGUGCGGUUCUCCUCUGGCACggaggucgaggguagccggcggcaauccggccagcggcgaggcugccaguccguccccuUGCCAAAGGAGAAUUGCCCUGccauucauaacccuccuggguuuauacaua
.((((.(((.((..((((((..((((..(((.(((((((((((.(((((.((.((.((..(((((((.((.((..........)).))..)))))))....)).)))).))))).))))))))))).)))..))))...)))))))).)))..))))...

Structure

--c    -u   g  au      -ga    ua   U           C     C  a  u  --ag       -g  g  aauc 
   gugu  auu ag  gagggu   gaau  caG GCGGUUCUCCU UGGCA gg gg cg    gguagcc  gc gc    c
   ||||  ||| ||  ||||||   ||||  ||| ||||||||||| ||||| || || ||    |||||||  || ||     
   caua  ugg uc  cuccca   cuua  GUC CGUUAAGAGGA ACCGU cc cc gc    ccgucgg  cg cg    g
aua    uu   g  --      aua    cc   C           A     u  -  u  cuga       ag  g  accg 

Annotation confidence High

Genome context

3: 7135266-7135425 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR399b

Mature bdi-miR399b-5p

• Accession: MIMAT0056998
• Description: Brachypodium distachyon bdi-miR399b-5p mature miRNA
• Sequence: 31 - GUGCGGUUCUCCUCUGGCAC - 50
• Evidence: experimental ; unknown

Mature bdi-miR399b-3p

• Accession: MIMAT0020678
• Description: Brachypodium distachyon bdi-miR399b-3p mature miRNA
• Sequence: 110 - UGCCAAAGGAGAAUUGCCCUG - 130
• Evidence: not_experimental

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293