Stem-loop bdi-MIR159a

Accession

MI0018117

Description

Brachypodium distachyon bdi-MIR159a precursor miRNA

Sequence

gggcaagcgaaagauauagacaagaagaagAGCUCCCUUCGAUCCAAUCcaggaggggaaguggucggaugcagcugccgguucauggauaccugucuggugcaugcagugugguaauagccugcgcaccugcaucgguuugcaugacccgggagaugaaccugccagcgucuuucccucgugCUUGGAUUGAAGGGAGCUCUcucuccccccucucucucucucccucucucu
(((..((.((.(((........(((.((.((((((((((((((((((..((.(((((((((((((.((.(.((.((.((((.(((((.(.((((((..(((((..((((.((.......))))))))))).)))..))).).))))).)))).)).))).)).))))....))))))))).)).)))))))))))))))))))))))......))).)).))..))).......

Structure

-------   ca  c  a   uauagaca   a  a                  UC  g         ----    c  a g  g  g    u     g u   --   cu     au    u  gg 
       ggg  ag ga aga        aga ga gAGCUCCCUUCGAUCCAA  ca gaggggaag    uggu gg u ca cu ccgg ucaug a acc  ugu  ggugc  gcag gu  u
       |||  || || |||        ||| || ||||||||||||||||||  || |||||||||    |||| || | || || |||| ||||| | |||  |||  |||||  |||| ||  a
       ccc  uc cu ucu        ucu cU CUCGAGGGAAGUUAGGUU  gu cucccuuuc    accg cc a gu ga ggcc aguac u ugg  acg  ccacg  cguc cg  a
ucucucu   uc  u  c   --cccccc   -  -                  -C  g         ugcg    u  a -  a  g    c     g u   cu   -u     --    -  au 

Annotation confidence Not enough data

Genome context

2: 5602219-5602452 [+]

Mature bdi-miR159a-3p

• Accession: MIMAT0020692
• Description: Brachypodium distachyon bdi-miR159a-3p mature miRNA
• Sequence: 184 - CUUGGAUUGAAGGGAGCUCU - 203
• Evidence: experimental ; Illumina [2]

Mature bdi-miR159a-5p

• Accession: MIMAT0027066
• Description: Brachypodium distachyon bdi-miR159a-5p mature miRNA
• Sequence: 31 - AGCUCCCUUCGAUCCAAUC - 49
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443