Accession
MI0018129
Description
Brachypodium distachyon
bdi-MIR5163a precursor miRNA
Sequence
33315
reads,
330.0
reads per million, 21 experiments
cagaggcucgucgauugcaaaucaugcgugCAUCUUUCUAUUAUUGAGCGUACcuagccuaaaauauuuaaaaauaauuggagcaacuaaaguuguuguuguucaauuacuuUUAGGUAUUUCAGGUUAGGUGGCUaaccaaugguggaaguugcacaccugauuugcgauuaucaacuuuaggau
.((((....(..((((((((((((.(.(((((..(((((((((((((((.((((((((((.((((((((((((.(((((((((((((.......)))))..)))))))).)))))))))))).)))))))))))))...)))))))))))).))))).).))))))))))))..)..)))).....
.((((....(..((((((((((((.(.(((((..(((((((((((((((.((((((((((.((((((((((((.(((((((((((((.......)))))..)))))))).)))))))))))).)))))))))))))...)))))))))))).))))).).))))))))))))..)..)))).....
Structure
----c gcuc uc u c UC --- G a a -- ua
agag g gauugcaaauca g gugCA UUUCUAUUAUUG AGC UACcuagccu aaauauuuaaaa uaauugga gcaac a
|||| | |||||||||||| | ||||| |||||||||||| ||| |||||||||| |||||||||||| |||||||| ||||| a
uuuc c uuagcguuuagu c cacgu gaaggugguaac UCG GUGGAUUGGA UUUAUGGAUUuu auuaacuu uguug g
uagga --aa ua c a -u caa - C c gu uu
Annotation confidence
Medium
Do you think this miRNA is real?
Genome context
4: 11947824-11948009 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bdi-MIR5163a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature bdi-miR5163a-5p
| Accession | MIMAT0027076 |
| Description | Brachypodium distachyon bdi-miR5163a-5p mature miRNA |
| Sequence | 31 - CAUCUUUCUAUUAUUGAGCGUAC - 53 |
| Evidence |
experimental
Illumina [2] |
Mature bdi-miR5163a-3p
| Accession | MIMAT0020704 |
| Description | Brachypodium distachyon bdi-miR5163a-3p mature miRNA |
| Sequence | 113 - UUAGGUAUUUCAGGUUAGGUGGCU - 136 |
| Evidence |
experimental
Illumina [2] |
References
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