Stem-loop bdi-MIR5181b

Accession

MI0018130

Description

Brachypodium distachyon bdi-MIR5181b precursor miRNA

Literature search

1 open access papers mention bdi-MIR5181b
(2 sentences)

Sequence

31185 reads, 243.0 reads per million, 21 experiments

ccguuaagaugaaaaugaacaugaauuauacUCCGAUCCAUAAUAAGUGUCGgggauuuaguacauuagcauaacuuuguacuaaaucuccgacaggccgacauUUAUUAUGGAUCGGAGGGAGUaugauuugagauaguagguaaucaaa
.......(((.........(.((((((((((((((((((((((((((((((((((((((((((((............))))))))))))((....)))))))))))))))))))))....))))))))))))).)..........)))...

Structure

ccguuaa   -gaaaaugaa a             ----                   --------            uuagc 
       gau          c ugaauuauacUCC    GAUCCAUAAUAAGUGUCGg        ggauuuaguaca     a
       |||          | |||||||||||||    |||||||||||||||||||        ||||||||||||      
       cua          g guuuaguaUGAGG    CUAGGUAUUAUUuacagcc        ucuaaaucaugu     u
----aaa   auggaugaua a             GAGG                   ggacagcc            uucaa 

Annotation confidence Low

Genome context

4: 7045106-7045256 [+]

Mature bdi-miR5181b-5p

• Accession: MIMAT0020705
• Description: Brachypodium distachyon bdi-miR5181b-5p mature miRNA
• Sequence: 32 - UCCGAUCCAUAAUAAGUGUCG - 52
• Evidence: not_experimental

Mature bdi-miR5181b-3p

• Accession: MIMAT0057003
• Description: Brachypodium distachyon bdi-miR5181b-3p mature miRNA
• Sequence: 105 - UUAUUAUGGAUCGGAGGGAGU - 125
• Evidence: experimental ; unknown

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293