miRBase entry: bdi-MIR5166

Stem-loop bdi-MIR5166


Accession
MI0018133
Description
Brachypodium distachyon bdi-MIR5166 precursor miRNA


Sequence

384 reads, 3.0 reads per million, 19 experiments
uuuccugaucgagaaccgagcuuagcuugggugguuagcccagcgaggUAUGUUGGCUGCCCACCAGGGuucgauccaacaaggucgcauucuauauaaauaauuuucguaaggugaggcaccaaaaugcaauccaaucacgccucuccuacaaauauauaucuauaauuuuguaaggugaggcaccagaaugcgacccaaucacgccucuacuacaauauguauauaauuuucguaaggugaggcgccagaaugugaccuuguggGAUCGGACCCUGGUGUGCAGCcagcauaccucgcugggcuaaccuaacacccaagcugagcucaguucucuucu
..........((((((.(((((((((((((((((((((((((((((((((((((((((((.((((((((((((((((.(((((((((((((((...................((((...)))).....(((.((.......(((((.((((((((..(((....)))..))))).))).)))))....)).)))..........((((((.(((....((((...........)))).)))))))))..))))))))))))))).)))))))))))))))).))))))))))))))))))))))))))))....))))))))))))))).))))))....

Structure
uuuccugauc      c               ----                            C                a               --------------------auauaaauaauuuucguaaggugaggcaccaaaau   a  caaucac     u   -     ua   a 
          gagaac gagcuuagcuugggu    gguuagcccagcgaggUAUGUUGGCUGC CACCAGGGuucgaucc acaaggucgcauucu                                                       gca uc       gccuc ccu acaaa  uau u
          |||||| |||||||||||||||    |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||                                                       ||| ||       ||||| ||| |||||  |||  
          cucuug cucgagucgaaccca    ccaaucgggucgcuccauacgacCGACG GUGGUCCCAGGCUAGg uguuccaguguaaga                                                       cgu ag       cggag gga uguuu  aua c
------ucuu      a               caau                            U                g               ccgcggaguggaaugcuuuuaauauauguauaacaucaucuccgcacuaacccag   a  ---acca     u   a     ua   u 


Annotation confidence Medium
Do you think this miRNA is real?

Genome context
4: 14440355-14440694 [+]

Database links

Mature bdi-miR5166-5p

Accession MIMAT0020708
Description Brachypodium distachyon bdi-miR5166-5p mature miRNA
Sequence 49 - UAUGUUGGCUGCCCACCAGGG - 69
Evidence not_experimental

Mature bdi-miR5166-3p

Accession MIMAT0057005
Description Brachypodium distachyon bdi-miR5166-3p mature miRNA
Sequence 267 - GAUCGGACCCUGGUGUGCAGC - 287
Evidence experimental
unknown

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293