Stem-loop bdi-MIR5167a

Accession

MI0018134

Description

Brachypodium distachyon bdi-MIR5167a precursor miRNA

Sequence

7967 reads, 71.0 reads per million, 20 experiments

auugacaugccagaccUUUUGAGUUCUUGCCGCUUUCCACuuugggugucauugguacucuagguaagguaauucaauuggaagauagaaaucuagauuucuuauguugccuuccuccauggugcagcagaagagagcggcaguggcaacaaggcacacuucuugcgggaauuacguucuuggaaggcaauauaaagaauauagccuucuagccuucuagagugaauuaccuuaacUAGAGCACCAAUGACACCCAUAGUggaaagucgcaaauacucaaaagguuuuggucuu
........((((((((((((((((..((((.((((((((((.((((((((((((((.((((((.((((((((((((.(((((((.(((((..(((.((((.((((((((((((((..(((..(((.((........)).))))))((((.(((.....))).))))((((((...)))))))))))))))))))).)))).)))..)))))..)))))))..)))))))))))).)))))).)))))))))))))).)))))))))).))))..)))))))))).))))))...

Structure

auugacau      -          UC    C          u              a      g            -a       -a     au   g    c              uccauggugcagcagaagagagcggcagug    c   g 
        gccaga ccUUUUGAGU  UUGC GCUUUCCACu ugggugucauuggu cucuag uaagguaauuca  uuggaag  uagaa  cua auuu uuauguugccuucc                              gcaa aag c
        |||||| ||||||||||  |||| |||||||||| |||||||||||||| |||||| ||||||||||||  |||||||  |||||  ||| |||| ||||||||||||||                              |||| ||| a
        ugguuu ggaaaacuca  aacg ugaaaggUGA ACCCACAGUAACCA GAGAUc auuccauuaagu  gaucuuc  aucuu  gau uaag aauauaacggaagg                              cguu uuc c
-----uuc      u          ua    c          U              C      a            ga       cg     cc   a    a              ---------------uucuugcauuaaggg    c   a 

Annotation confidence Medium

Genome context

4: 42126781-42127074 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR5167a

Mature bdi-miR5167a-5p

• Accession: MIMAT0020709
• Description: Brachypodium distachyon bdi-miR5167a-5p mature miRNA
• Sequence: 17 - UUUUGAGUUCUUGCCGCUUUCCAC - 40
• Evidence: experimental ; Illumina [2]

Mature bdi-miR5167a-3p

• Accession: MIMAT0027078
• Description: Brachypodium distachyon bdi-miR5167a-3p mature miRNA
• Sequence: 237 - UAGAGCACCAAUGACACCCAUAGU - 260
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443