Stem-loop bdi-MIR5180b

Accession

MI0018138

Description

Brachypodium distachyon bdi-MIR5180b precursor miRNA

Literature search

2 open access papers mention bdi-MIR5180b
(2 sentences)

Sequence

3422 reads, 29.0 reads per million, 21 experiments

ggcauacuuaauaguuacugccuccgauccaaaaUAAGUGUCUCAGUUUUGAACUaagccuaguucaagccuauuucaaaacugcgaCACUUAUUUUGGAUCGGAGGUaguauuaaaguucuugaaguuuguacu
.(((.((((......(((((((((((((((((((((((((((.((((((((((.((.((.........)).)).)))))))))).)))))))))))))))))))))))))))............)))).)))...

Structure

--g   u    ------aauagu                           U          C  a  cua 
   gca acuu            uacugccuccgauccaaaaUAAGUGUC CAGUUUUGAA Ua gc   g
   ||| ||||            ||||||||||||||||||||||||||| |||||||||| || ||   u
   ugu ugaa            augaUGGAGGCUAGGUUUUAUUCACag gucaaaacuu au cg   u
uca   u    guucuugaaauu                           c          u  c  aac 

Annotation confidence Low

Genome context

4: 5647864-5647998 [-]

Mature bdi-miR5180b-5p

• Accession: MIMAT0020713
• Description: Brachypodium distachyon bdi-miR5180b-5p mature miRNA
• Sequence: 35 - UAAGUGUCUCAGUUUUGAACU - 55
• Evidence: not_experimental

Mature bdi-miR5180b-3p

• Accession: MIMAT0057008
• Description: Brachypodium distachyon bdi-miR5180b-3p mature miRNA
• Sequence: 88 - CACUUAUUUUGGAUCGGAGGU - 108
• Evidence: experimental ; unknown

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293