Stem-loop bdi-MIR5171a

Accession

MI0018140

Description

Brachypodium distachyon bdi-MIR5171a precursor miRNA

Literature search

1 open access papers mention bdi-MIR5171a
(1 sentences)

Sequence

8386 reads, 84.0 reads per million, 21 experiments

auucaaacauuugccaaaauugcaugcuuccuacuucucauauuacgugccgaaauuuuacauagaucuauAUACAUUCAUAUUUGAACAAAUUUaagucACUUAAUAUGGGACGGAAGAAguauguuauuuuaccgucgcguuagcugacgug
...............(((((.(((((((((...(.((((((((((.((((..((((((..................((((....)))).))))))..).))).)))))))))).)...))))))))).)))))..((((((....)).))))..

Structure

------auucaaacauuugcc     u         cua u          c   - cg      uacauagaucuauAUACA    U 
                     aaaau gcaugcuuc   c ucucauauua gug c  aaauuu                  UUCA A
                     ||||| |||||||||   | |||||||||| ||| |  ||||||                  ||||  
                     uuuua uguaugAAG   G AGGGUAUAAU CAc g  UUUAAA                  AAGU U
gugcagucgauugcgcugcca     u         AAG C          U   u aa      -----------------C    U 

Annotation confidence Low

Genome context

1: 46051254-46051407 [-]

Mature bdi-miR5171a-5p

• Accession: MIMAT0057009
• Description: Brachypodium distachyon bdi-miR5171a-5p mature miRNA
• Sequence: 72 - AUACAUUCAUAUUUGAACAAAUUU - 95
• Evidence: experimental ; unknown

Mature bdi-miR5171a-3p

• Accession: MIMAT0020715
• Description: Brachypodium distachyon bdi-miR5171a-3p mature miRNA
• Sequence: 101 - ACUUAAUAUGGGACGGAAGAA - 121
• Evidence: not_experimental

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293