Stem-loop bdi-MIR5172

Accession

MI0018141

Description

Brachypodium distachyon bdi-MIR5172 precursor miRNA

Sequence

ccucuugacacuauguacuccaaauucuuuuugcCGAGGAGCUAGUAGAUCGGGAugaagucaaggaucaggcaaagaagaacccuugaauucaauccuaccaaggagcuaguauacgucuuauugcagugcuugcaacgccaagcuuuugauccaucggaauuuuuccccuuaggugcagcgaggggaauuaugacucaucaaguagggguuuugccuguuuagcaguacccugcuuggacgauugaucuucuucguccgagucgucaucgggacgaguauguucaucaccgacauuguugagaucaauguccgcgucagccuccucgacuucauccUGAUCUACUAGCUCCUCGGCAgaaagaaauucaaguacauacucuuacauu
...........((((((((..((.((((((((((((((((((((((((((((((((((((((.((((.((((((.....(((((((((.......((((....))))((.((((.......))))))...(((((......))))).((((((.....(..((..((((((((.(......)))))))))..))..)..)))))))))))))))))))))...(((((....))))).((((.(((((((((.(((((((((.......)).))))))).(((((.......)))))....)))))))))))))((....)).)))).)))))))))))))))))))))))))))))))))))))).))..))))))))..........

Structure

ccucuugacac        cc  a                                      a    ------------------------------------------------------------------------------------------------------u      aagaa         aauucaauccuaccaaggagcuaguauacgucuuauugcagugcuugcaacgccaagcu      ccauc ga  uu        a gu 
           uauguacu  aa uucuuuuugcCGAGGAGCUAGUAGAUCGGGAugaaguc agga                                                                                                       caggca     gaacccuug                                                           uuugau     g  au  uuccccuu g  g
           ||||||||  || |||||||||||||||||||||||||||||||||||||| ||||                                                                                                       ||||||     |||||||||                                                           ||||||     |  ||  |||||||| |   
           auacauga  uu aagaaagACGGCUCCUCGAUCAUCUAGUccuacuucag uccu                                                                                                       guccgu     uuuggggau                                                           gaacua     c  ua  aaggggag c  c
-uuacauucuc        ac  a                                      c    ccgacugcgccuguaacuagaguuguuacagccacuacuuguaugagcagggcuacugcugagccugcuucuucuaguuagcagguucgucccaugacgauuu      -----         -----------------------------------------------------------      ---cu ag  uu        - ga 

Annotation confidence Not enough data

Genome context

1: 44311568-44311956 [+]

Mature bdi-miR5172-3p

• Accession: MIMAT0020716
• Description: Brachypodium distachyon bdi-miR5172-3p mature miRNA
• Sequence: 339 - UGAUCUACUAGCUCCUCGGCA - 359
• Evidence: experimental ; Illumina [2]

Mature bdi-miR5172-5p

• Accession: MIMAT0027080
• Description: Brachypodium distachyon bdi-miR5172-5p mature miRNA
• Sequence: 35 - CGAGGAGCUAGUAGAUCGGGA - 55
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443