Stem-loop bdi-MIR5173

Accession

MI0018142

Description

Brachypodium distachyon bdi-MIR5173 precursor miRNA

Sequence

gagaugccuggcuguauagggccguauucuUCUCGUAUAUGCGGAUGUACCauauggaccugacuucaagccaugguucggucgacuagacgcaucaggcccgagccuucuuaaauuuggauucauacggUGCAUCUGUAUAUACGAGAAGauacggccguauauagccaguaucucgauu
(((((((.((((((((((.((((((((.(((((((((((((((((((((((.((((((.((((.((.(((....(((((((((..............)).)))))))..))).)).)))).)))))).))))))))))))))))))))))))))))))).)))))))))))))))))....

Structure

----       c          g        u                       a      c    c  c   ccau       -  gacuag 
    gagaugc uggcuguaua ggccguau cuUCUCGUAUAUGCGGAUGUACC uaugga cuga uu aag    gguucgg uc      a
    ||||||| |||||||||| |||||||| ||||||||||||||||||||||| |||||| |||| || |||    ||||||| ||       
    cucuaug accgauauau ccggcaua GAAGAGCAUAUAUGUCUACGUgg auacuu gguu aa uuc    ccgagcc gg      c
uuag       -          g        -                       c      a    u  a   --uu       c  acuacg 

Annotation confidence Not enough data

Genome context

1: 22135899-22136079 [-]

Mature bdi-miR5173-5p

• Accession: MIMAT0020717
• Description: Brachypodium distachyon bdi-miR5173-5p mature miRNA
• Sequence: 31 - UCUCGUAUAUGCGGAUGUACC - 51
• Evidence: experimental ; Illumina [2]

Mature bdi-miR5173-3p

• Accession: MIMAT0027081
• Description: Brachypodium distachyon bdi-miR5173-3p mature miRNA
• Sequence: 131 - UGCAUCUGUAUAUACGAGAAG - 151
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443