Stem-loop bdi-MIR5174a

Accession

MI0018143

Description

Brachypodium distachyon bdi-MIR5174a precursor miRNA

Literature search

1 open access papers mention bdi-MIR5174a
(3 sentences)

Sequence

11111 reads, 82.0 reads per million, 21 experiments

caaguuuauuaaaauucauagaucuuacuuacuccguuccauaaagAUUGGCGUGAAUUUGAACUAGAGCuaguuuaaauccgugccaaucuUUAUGAAACGGAGGGAGUAcaacagagucagucaugacuuggcagauuuugcaagaucgagucgacguagagcu
..(((((......((((...(((((((((..(((((((.((((((((((((((((.((((((((((....)))))))))).)))))))))))))))).)))))))..))))...(((((((.((((.....)))).)))))))..))))))))).......)))))

Structure

ca     -auuaaa    aua     ----------------------------------    ua       c                A          G 
  aguuu       auuc   gaucu                                  uacu  cuccguu cauaaagAUUGGCGUG AUUUGAACUA A
  |||||       ||||   |||||                                  ||||  ||||||| |||||||||||||||| ||||||||||  
  ucgag       ugag   cuaga                                  AUGA  GAGGCAA GUAUUucuaaccgugc uaaauuugau G
--     augcagc    ---     acguuuuagacgguucaguacugacugagacaac    GG       A                c          C 

Annotation confidence Low

Genome context

1: 45787966-45788131 [-]

Mature bdi-miR5174a-5p

• Accession: MIMAT0020718
• Description: Brachypodium distachyon bdi-miR5174a-5p mature miRNA
• Sequence: 47 - AUUGGCGUGAAUUUGAACUAGAGC - 70
• Evidence: not_experimental

Mature bdi-miR5174a-3p

• Accession: MIMAT0057010
• Description: Brachypodium distachyon bdi-miR5174a-3p mature miRNA
• Sequence: 93 - UUAUGAAACGGAGGGAGUA - 111
• Evidence: experimental ; unknown

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293