Stem-loop bdi-MIR5175b

Accession

MI0018146

Description

Brachypodium distachyon bdi-MIR5175b precursor miRNA

Literature search

2 open access papers mention bdi-MIR5175b
(2 sentences)

Sequence

3124 reads, 46.0 reads per million, 21 experiments

uccaaguugguguuugcgugauucagaacuacuuCCUCUGUUCCUAAAUUCUUGUCauuguuuuaguucaaauuuguauuaaagccACGACAAGAAUUUAGGAAuggagggaguaugagauaugcuacucccuuagcuuuu
...(((((((.((..(((((.((((....(((((((((((((((((((((((((((...((((((((.((....)).))))))))...))))))))))))))))))))))))))))))).))))).)).))...)))))..

Structure

ucc     ---  u  uu     a    gaac                           auu        u  a 
   aaguu   gg gu  gcgug uuca    uacuuCCUCUGUUCCUAAAUUCUUGUC   guuuuagu ca a
   |||||   || ||  ||||| ||||    |||||||||||||||||||||||||||   |||||||| ||  
   uucga   cc ca  cguau gagu    augagggagguAAGGAUUUAAGAACAG   cgaaauua gu u
-uu     uuc  u  -u     a    ----                           CAc        u  u 

Annotation confidence Medium

Genome context

3: 19465406-19465546 [+]

Mature bdi-miR5175b-5p

• Accession: MIMAT0020722
• Description: Brachypodium distachyon bdi-miR5175b-5p mature miRNA
• Sequence: 35 - CCUCUGUUCCUAAAUUCUUGUC - 56
• Evidence: not_experimental

Mature bdi-miR5175b-3p

• Accession: MIMAT0057012
• Description: Brachypodium distachyon bdi-miR5175b-3p mature miRNA
• Sequence: 87 - ACGACAAGAAUUUAGGAA - 104
• Evidence: experimental ; unknown

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293